• ChIP-Seq Workflow

    Basic workflow for ChIP-seq analysis

  • Classic RNA-Seq (Tuxedo Protocol)

    Based off: http://training.scicomp.jic.ac.uk/docs/galaxycourse_book/galaxy_advanced_workflows.html Using: http://training.scicomp.jic.ac.uk/docs/galaxycourse_book/_images/slide_40.jpg And: http://training.scicomp.jic.ac.uk/docs/galaxycourse_book/_images/4_list_paired_collection_workflow.png

  • Clinical genomics Learning Path

  • Create and curate biological pathways

    for WikiPathways database using PathVisio for drawing and curation/modification

  • eDGAR

    A database of genetic Disease-Gene Associations with annotated Relationships among genes.

  • Find and map information about a specific variant from (different) resources

    How to find information about known pathogenicity/benign-ness, predicted pathogenicity, effect of the variant on protein structure, effect on protein expression, effect on specific splice variants and isoforms, information about variant abundance - in specific populations

    Includes
    - Variant...

  • Fork of Pathway and network analysis of transcriptomics data

    This workflow describes how to get from transcriptomics data (RNAseq, microarray) or proteomics data
    - a a list of affected biological pathways
    - a visualization of differently expressed genes in a specific biological pathway
    - a network based on a specific biological pathway
    - an extended...

  • INPS-MD

    INPS-MD is a web server devised to the prediction of protein stability change upon single point mutation, from protein 3D structure or sequence.

  • Pathway and network analysis of transcriptomics data

    This workflow describes how to get from transcriptomics data (RNAseq, microarray) or proteomics data
    - a a list of affected biological pathways
    - a visualization of differently expressed genes in a specific biological pathway
    - a network based on a specific biological pathway
    - an extended...

  • Proteomics Workflow

  • QuasR

  • QUASR

  • Sequence Translation and Product Identification

    This Concept Map introduces software tools for deducing the translation products of fragments of DNA.
    You will enter a DNA fragment, and identify the correct reading frame by searching a protein sequence database with its translation products.

    On completion, you will be able to:

    -...

  • SNPs and GO

    A server for the prediction of single point protein mutations likely to be involved in the insurgence of diseases in humans.