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Discussion: Guidelines for submitting data to ExperimentHub

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Discussion: Guidelines for submitting data to ExperimentHub https://tess.oerc.ox.ac.uk/materials/discussion-guidelines-for-submitting-data-to-experimenthub Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
HCA Data Access

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

HCA Data Access https://tess.oerc.ox.ac.uk/materials/hca-data-access Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Single cell updates

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Single cell updates https://tess.oerc.ox.ac.uk/materials/single-cell-updates Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Introduction to DataFrames and the impact of recent changes

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Introduction to DataFrames and the impact of recent changes https://tess.oerc.ox.ac.uk/materials/introduction-to-dataframes-and-the-impact-of-recent-changes Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Pitfalls and best practices for serializing Bioconductor objects

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Pitfalls and best practices for serializing Bioconductor objects https://tess.oerc.ox.ac.uk/materials/pitfalls-and-best-practices-for-serializing-bioconductor-objects Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Helis Academy - Persistent identifiers and their use cases

Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source

Keywords: Referencing data and code, Findability of data and code, Identifying data and code

Helis Academy - Persistent identifiers and their use cases https://tess.oerc.ox.ac.uk/materials/helis-academy-persistent-identifiers-and-their-use-cases Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source Referencing data and code, Findability of data and code, Identifying data and code data stewards Life Science Researchers bioinformaticians
Helis Academy - Data Management Plans, why and how?

Research Data Management The organisation of data throughout the research project everyday management of research data (storage, file naming, preservation) how will data be preserved and shared after the project is completed?

Scientific topics: Data management

Keywords: data management plan, data life cycle

Helis Academy - Data Management Plans, why and how? https://tess.oerc.ox.ac.uk/materials/helis-academy-data-management-plans-why-and-how Research Data Management The organisation of data throughout the research project everyday management of research data (storage, file naming, preservation) how will data be preserved and shared after the project is completed? Data management data management plan, data life cycle Life Science Researchers
Helis Academy - Data Sharing, publishing and archiving

Basic knowledge of: o Know what a repository is o Characteristics of Data Sharing, Archiving and Publishing o Knowledge of major platforms for Sharing, Archiving and Publishing Hands on experience: o Dataverse possibilities for sharing and publishing o Designing requirements digital...

Keywords: data sharing, data publishing, data archiving, data repositories

Helis Academy - Data Sharing, publishing and archiving https://tess.oerc.ox.ac.uk/materials/helis-academy-data-sharing-publishing-and-archiving Basic knowledge of: o Know what a repository is o Characteristics of Data Sharing, Archiving and Publishing o Knowledge of major platforms for Sharing, Archiving and Publishing Hands on experience: o Dataverse possibilities for sharing and publishing o Designing requirements digital archives o Finding your ideal archive data sharing, data publishing, data archiving, data repositories
Surprises from scalable container and cloud-based R / Bioconductor deployments

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Resource type: Talk

Surprises from scalable container and cloud-based R / Bioconductor deployments https://tess.oerc.ox.ac.uk/materials/surprises-from-scalable-container-and-cloud-based-r-bioconductor-deployments Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images.
Use Open Data in Teaching

In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f...

Use Open Data in Teaching https://tess.oerc.ox.ac.uk/materials/use-open-data-in-teaching-850d755a-be36-4bff-9742-e548f5d75575 In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f... Librarians and Repository managers PHD Students
Open Science basics for KU Leuven library staffModerated

In this course for library staff at KU Leuven, participants will be introduced to the basics of Open Science.After completion of the course, participants will be able to:...

Open Science basics for KU Leuven library staffModerated https://tess.oerc.ox.ac.uk/materials/open-science-basics-for-ku-leuven-library-staffmoderated-4db92544-5d4a-4c1c-bfe5-05f1f93abeb3 In this course for library staff at KU Leuven, participants will be introduced to the basics of Open Science.After completion of the course, participants will be able to:... Librarians and Repository managers Research Administration
Use Open Data in Teaching

In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f...

Use Open Data in Teaching https://tess.oerc.ox.ac.uk/materials/use-open-data-in-teaching-666d434d-084f-446b-8e85-3e3274b539e9 In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f... Librarians and Repository managers PHD Students
Open Science basics for KU Leuven library staffModerated

In this course for library staff at KU Leuven, participants will be introduced to the basics of Open Science.After completion of the course, participants will be able to:...

Open Science basics for KU Leuven library staffModerated https://tess.oerc.ox.ac.uk/materials/open-science-basics-for-ku-leuven-library-staffmoderated-b3996310-feb3-4d70-8a5f-9de136748fa1 In this course for library staff at KU Leuven, participants will be introduced to the basics of Open Science.After completion of the course, participants will be able to:... Librarians and Repository managers Research Administration
Use Open Data in Teaching

In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f...

Use Open Data in Teaching https://tess.oerc.ox.ac.uk/materials/use-open-data-in-teaching-d41b7f84-4223-4f23-89ed-ab50be6ffb1e In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f...
Open Science basics for KU Leuven library staffModerated

In this course for library staff at KU Leuven, participants will be introduced to the basics of Open Science.After completion of the course, participants will be able to:...

Open Science basics for KU Leuven library staffModerated https://tess.oerc.ox.ac.uk/materials/open-science-basics-for-ku-leuven-library-staffmoderated In this course for library staff at KU Leuven, participants will be introduced to the basics of Open Science.After completion of the course, participants will be able to:...
Use Open Data in Teaching

In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f...

Use Open Data in Teaching https://tess.oerc.ox.ac.uk/materials/use-open-data-in-teaching In higher education and research, the topics of open science and research data management have gained interest. This module stimulates the use of open research data in teaching, thus f...
hello world

This is short, hahahahah

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-f7c12759-6ff7-4eb8-84b6-1481e432f6f2 This is short, hahahahah
Test Stayk

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Test Stayk https://tess.oerc.ox.ac.uk/materials/test-stayk fdsafdsafds
hello world

This is short

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-5b0a0bb4-68d6-43d6-b278-307e1fa440db This is short
hello world

This is short

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-f4412ece-a80d-4723-a03f-0fda5252f2f2 This is short
hello world

This is short

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-100e7e5d-081a-42bf-b0e0-822e13eb111c This is short
hello world

This is short

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-4e3816e3-5518-4385-86f6-157b27023cad This is short
hello world

This is short

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-575fa800-282b-467d-86b1-4e4f657eef22 This is short
hello world

This is short

hello world https://tess.oerc.ox.ac.uk/materials/hello-world-8b665675-d9ea-4b3f-8f1c-47d33f1ecb73 This is short
Exemplar Training Resource

Short

Scientific topics: Anatomy

Operations: Annotation

Keywords: keywordsafd, okword

Resource type: No type

Exemplar Training Resource https://tess.oerc.ox.ac.uk/materials/hello-world-1bc2ac26-4360-462f-8e40-606098081130 Short I am not a contributors Are you Anatomy keywordsafd, okword fangliang
Hello World

Short

Scientific topics: Anatomy

Operations: Annotation

Keywords: keywordsafd, okword

Resource type: No type

Hello World https://tess.oerc.ox.ac.uk/materials/hello-world Short I am not a contributors Are you Anatomy keywordsafd, okword fangliang
Lab 9-1: Efficient and Parallel Evaluation

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Keywords: Big data

Lab 9-1: Efficient and Parallel Evaluation https://tess.oerc.ox.ac.uk/materials/lab-9-1-efficient-and-parallel-evaluation Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images. Big data
Evening session: Efficient R

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Keywords: Big data

Evening session: Efficient R https://tess.oerc.ox.ac.uk/materials/evening-session-efficient-r Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images. Big data
Lecture 20-1: Working with Large Data

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Keywords: Big data

Lecture 20-1: Working with Large Data https://tess.oerc.ox.ac.uk/materials/lecture-20-1-working-with-large-data Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images. Big data
Lecture 19: Gene Set Enrichment Analysis

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an...

Keywords: GSEA

Lecture 19: Gene Set Enrichment Analysis https://tess.oerc.ox.ac.uk/materials/lecture-19-gene-set-enrichment-analysis Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, 1560 software packages, and an active user community. Bioconductor is also available as an AMI (Amazon Machine Image) and a series of Docker images. GSEA