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287 events found
  • Executive Masters in Management of Research Infrastructures

    13 November 2018 - 26 June 2020

    Milan, Italy

    Elixir node event
    Executive Masters in Management of Research Infrastructures https://tess.oerc.ox.ac.uk/events/executive-masters-in-management-of-research-infrastructures This Masters development programme is aimed at current Research Infrastructures managers and leaders who wish to develop the competencies required to meet the needs of Research Infrastructures in the planning, construction and operation phases. 2018-11-13 12:00:00 UTC 2020-06-26 12:00:00 UTC University of Milano-Bicocca, Milan, Italy University of Milano-Bicocca Milan Italy 20126 [] Claire Johnson [] [] [] [] HDRUK
  • What is Genetic Counselling?

    27 January - 19 April 2020

    What is Genetic Counselling? https://tess.oerc.ox.ac.uk/events/what-is-genetic-counselling # Overview * **Duration:** 6 weeks live, 2 hours per week * **Free** * **Certificate of achievement** available on satisfactory completion * **Start Date:** The course is run ‘live’ for 6 weeks from the start date above. Once this period is over there will be no live monitoring of the forums, but you can still join and complete the course during the remaining period. ### Why join the course? Who are genetic counsellors? Who has genetic counselling and what does a genetic counsellor do? On this course, you will find the answers to these questions whilst learning about the role of genetic counselling in healthcare and the genomic era. You will discover why people seek genetic counselling and how it compares in different contexts and countries. You will explore the main skills and knowledge needed of a genetic counsellor, as well as their key responsibilities to patients. You will also discuss the ethical issues of genetic counselling, and its varied opportunities and challenges for the future. ### Who is the course for? This course is designed for healthcare professionals, clinicians, biomedical research scientists, and anyone curious about genetic counselling. Although not required, a basic knowledge of genetics, genetic testing technologies, and inheritance patterns would help support your learning on this course. # Programme ### What topics will you cover? * Why people would see a genetic counsellor * Some of a genetic counsellor’s key tasks * A genetic counsellor’s key skills and knowledge: counselling skills, medical and scientific knowledge * Ethical issues in genetic counselling * What the future might hold for genetic counsellors ### What will you achieve? By the end of the course, you'll be able to... * Identify why people have genetic counselling and the different contexts in which people receive genetic counselling * Describe the different skills and knowledges needed by genetic counsellors * Compare genetic counselling in different contexts and different countries * Reflect on some ethical issues that arise in genetic counselling * Discuss the role of genetic counselling in healthcare as we enter the ‘genomic era'. ### What software or tools do you need? No specific software, hardware or other resources are required to complete the course. # Educators ## Lead Educators ### Anna Middleton I am the Chair of the Association of Genetic Nurses and Counsellors in the UK and ROI (2018/19) and Head of Society and Ethics Research at the Wellcome Genome Campus, Connecting Science, Cambridge, UK ### Jonathan Roberts I am a pre-registration genetic counsellor at Addenbrooke’s Hospital, Cambridge. I am also a Staff Scientists at the Wellcome Genome Campus. I conduct my research within the Society and Ethics Research group. # What's Included Wellcome Genome Campus Advanced Courses and Scientific Conferences are offering everyone who joins this course a free digital upgrade, so that you can experience the full benefits of studying online for free. This means that you get: * Unlimited access to this course * Includes any articles, videos, peer reviews and quizzes * Tests to validate your learning * A PDF Certificate of Achievement to prove your success when you’re eligible 2020-01-27 09:00:00 UTC 2020-04-19 23:59:59 UTC Wellcome Genome Campus - Advanced Courses [] advancedcourses@wellcomegenomecampus.org [] [] workshops_and_courses [] geneticcounsellingHDRUK
  • What is Genetic Counselling?

    27 January - 19 April 2020

    What is Genetic Counselling? https://tess.oerc.ox.ac.uk/events/what-is-genetic-counselling-9afc5662-c194-485d-94dd-cf03e0c5f80e # Overview * **Duration:** 6 weeks live, 2 hours per week * **Free** * **Certificate of achievement** available on satisfactory completion * **Start Date:** The course is run ‘live’ for 6 weeks from the start date above. Once this period is over there will be no live monitoring of the forums, but you can still join and complete the course during the remaining period. ### Why join the course? Who are genetic counsellors? Who has genetic counselling and what does a genetic counsellor do? On this course, you will find the answers to these questions whilst learning about the role of genetic counselling in healthcare and the genomic era. You will discover why people seek genetic counselling and how it compares in different contexts and countries. You will explore the main skills and knowledge needed of a genetic counsellor, as well as their key responsibilities to patients. You will also discuss the ethical issues of genetic counselling, and its varied opportunities and challenges for the future. ### Who is the course for? This course is designed for healthcare professionals, clinicians, biomedical research scientists, and anyone curious about genetic counselling. Although not required, a basic knowledge of genetics, genetic testing technologies, and inheritance patterns would help support your learning on this course. # Programme ### What topics will you cover? * Why people would see a genetic counsellor * Some of a genetic counsellor’s key tasks * A genetic counsellor’s key skills and knowledge: counselling skills, medical and scientific knowledge * Ethical issues in genetic counselling * What the future might hold for genetic counsellors ### What will you achieve? By the end of the course, you'll be able to... * Identify why people have genetic counselling and the different contexts in which people receive genetic counselling * Describe the different skills and knowledges needed by genetic counsellors * Compare genetic counselling in different contexts and different countries * Reflect on some ethical issues that arise in genetic counselling * Discuss the role of genetic counselling in healthcare as we enter the ‘genomic era'. ### What software or tools do you need? No specific software, hardware or other resources are required to complete the course. # Educators ## Lead Educators ### Anna Middleton I am the Chair of the Association of Genetic Nurses and Counsellors in the UK and ROI (2018/19) and Head of Society and Ethics Research at the Wellcome Genome Campus, Connecting Science, Cambridge, UK ### Jonathan Roberts I am a pre-registration genetic counsellor at Addenbrooke’s Hospital, Cambridge. I am also a Staff Scientists at the Wellcome Genome Campus. I conduct my research within the Society and Ethics Research group. # What's Included Wellcome Genome Campus Advanced Courses and Scientific Conferences are offering everyone who joins this course a free digital upgrade, so that you can experience the full benefits of studying online for free. This means that you get: * Unlimited access to this course * Includes any articles, videos, peer reviews and quizzes * Tests to validate your learning * A PDF Certificate of Achievement to prove your success when you’re eligible 2020-01-27 09:00:00 UTC 2020-04-19 23:59:59 UTC Wellcome Genome Campus - Advanced Courses [] advancedcourses@wellcomegenomecampus.org [] [] workshops_and_courses [] geneticcounsellingHDRUK
  • Data Carpentry - Room 4.2, Lister Building

    12 February - 4 March 2020

    Data Carpentry - Room 4.2, Lister Building https://tess.oerc.ox.ac.uk/events/data-carpentry-room-4-2-lister-building Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-02-12 09:00:00 UTC 2020-03-04 00:00:00 UTC Room 4.2, Lister Building Room 4.2, Lister Building University of Edinburgh [] [] workshops_and_courses [] []
  • CABANA Workshop: NGS analysis applied to virome sequencing in agricultural systems

    24 February - 4 March 2020

    San Jose, Costa Rica

    Elixir node event
    CABANA Workshop: NGS analysis applied to virome sequencing in agricultural systems https://tess.oerc.ox.ac.uk/events/cabana-workshop-ngs-analysis-applied-to-virome-sequencing-in-agricultural-systems This workshop will provide wet-lab and/or computational training around the experimental design, laboratory techniques and detailed computational analysis of virome data from agricultural systems. 2020-02-24 08:00:00 UTC 2020-03-04 17:30:00 UTC University of Costa Rica (UCR), San Jose, Costa Rica University of Costa Rica (UCR) San Jose Costa Rica [] CABANA UCR Costa Rica [] [] [] [] HDRUK
  • 16th Advanced School on Parallel Computing @ Cineca

    24 - 28 February 2020

    16th Advanced School on Parallel Computing @ Cineca https://tess.oerc.ox.ac.uk/events/16th-advanced-school-on-parallel-computing-cineca Application deadline: January 24th, 2020 Description: Heterogeneous architectures with nodes featuring accelerator cards or sockets are taking an important share in the HPC market, given their superiority in term of flop/watt with respect to CISC and RISC architecture. To be effective on heterogeneous architecture applications usually requires important refactoring and adaptation, and many programming paradigms are available, some vendor specific and some other defined by an open standard, but without a clear winner yet (e.g. as it is the case for message passing communications where there is MPI, available for all network technologies). This school focus on software development techniques to address the implementation of new HPC applications and the re-factory of existing ones, in the era of heterogeneous, energy efficient, massively parallel architectures, toward exascale, with theoretical lectures and hands-on sessions on the different most promising programming techniques and paradigms for accelerated computing. Software engineering techniques and high productivity languages will complement lectures on parallel programming and porting toward new architectures, to allow the implementation of application that can be maintained across a complex and fast evolving HPC architectures.   Topics: Heterogeneous architectures Elements of software engineering Parallel programming techniques for accelerated computing, including CUDA, OpenMP, OpenACC, SYCL Parallel programming techniques for massively parallel applications Models for applications integrating MPI, OpenMP OpenACC, CUDA and CUDA Fortran paradigms Target audience: The school is aimed at PRACE users, final year master students, PhD students, and young researchers in computational sciences and engineering, with different backgrounds, interested in applying the emerging technologies on high performance computing to their research. Pre-requisites: Good knowledge of parallel programming with MPI and/or OpenMP, knowledge of FORTRAN and C languages. Basic knowledge of parallel computer architectures. Admitted students: Attendance is free. A grant of 300 EUR (for students working abroad) and 150 EUR (for students working in Italy) will be available for participants not funded by their institution and not working or living in the Bologna area. Documentation will be required. Lunches for the 5 days will be provided by Cineca. Each student will be given a two month access to the Cineca's supercomputing resources. The number of participants is limited to 25 students. Applicants will be selected according to their experience, qualifications and scientific interest BASED ON WHAT WRITTEN IN THE REGISTRATION FORM. DUE TO PRIVACY REASON THE STUDENTS ADMITTED AND NOT ADMITTED WILL BE CONTACTED VIA EMAIL ON JANUARY, FRIDAY 31st. IF YOU SUBMITTED AND DON'T RECEIVE THE EMAIL, PLEASE WRITE AT corsi.hpc@cineca.it.   Acknowledgement: The support of CINI for the software engineering module is gratefully acknowledged.   https://events.prace-ri.eu/event/976/ 2020-02-24 08:00:00 UTC 2020-02-28 17:00:00 UTC [] [] [] workshops_and_courses [] []
  • Ensembl Browser Workshop, Nottingham, 24/25 February 2020

    24 - 25 February 2020

    Nottingham, United Kingdom

    Elixir node event
    Ensembl Browser Workshop, Nottingham, 24/25 February 2020 https://tess.oerc.ox.ac.uk/events/ensembl-browser-workshop-nottingham-24-25-february-2020 Work with the Ensembl Outreach team to get to grips with the Ensembl browser, accessing gene, variation, comparative genomics and regulation data, and mine these data with BioMart. 2020-02-24 09:00:00 UTC 2020-02-25 17:00:00 UTC University of Nottingham, Nottingham, United Kingdom University of Nottingham Nottingham United Kingdom NG7 2RD [] Astrid Gall [] [] [] [] HDRUK
  • Introduction to Heterogeneous Memory Usage @ BSC

    25 February 2020

    Introduction to Heterogeneous Memory Usage @ BSC https://tess.oerc.ox.ac.uk/events/introduction-to-heterogeneous-memory-usage-bsc The registration to this course is now open. All PATC Courses at BSC do not charge fees. PLEASE BRING YOUR OWN LAPTOP. Convener:  Antonio Peña, Computer Sciences Senior Researcher, Accelerators and Communications for High Performance Computing, BSC Objectives:  The objective of this course is to learn how to use systems with more than one memory subsystem. We will see the different options on using Intel’s KNL memory subsystems and systems equipped with Intel’s Optane technology. Learning Outcomes: The students who finish this course will able to leverage applications using multiple memory subsystems Level: INTERMEDIATE: for trainees with some theoretical and practical knowledge; those who finished the beginners course Prerequisites: Basic skills in C programming. Agenda: 9:00-9:30 Registration   9:30-10:30 Introduction to Memory Technologies Petar Radojkovic 10:30-11:00 Coffee Break   11:00-12:30 Use of Heterogeneous Memories Antonio J. Peña 12:30-13:00 Hands-on: Environment Setup Marc Jordà 13:00-14:30 Lunch   14:30-18:00 Hands-on Marc Jordà https://events.prace-ri.eu/event/913/ 2020-02-25 08:00:00 UTC 2020-02-25 17:00:00 UTC [] [] [] workshops_and_courses [] []
  • Statistics bootcamp using R

    25 - 28 February 2020

    Cambridge, United Kingdom

    Elixir node event
    Statistics bootcamp using R https://tess.oerc.ox.ac.uk/events/statistics-bootcamp-using-r This 4-days bootcamp provides an in depth look at statistical analyses using R. Day 1 aims to introduce R as a tool for statistics and graphics, with the main aim being to become comfortable with the R environment. As well as introducing core R language concepts, this course also provides the basics of using the Tidyverse for data maniupulation, and ggplot for plotting. It will focus on entering and manipulating data in R and producing simple graphs. Day 2-4 will focus on the statistical possibilities of R, covering from experimental design to analysis of quantitative and qualitative data. Ample time will be given to participants to practice different type of analysis and interact with the trainers to discuss their statistical problems. This event is organized in collaboration with the [Babraham Institutes's Bioinformatics Group](https://www.bioinformatics.babraham.ac.uk/index.html) and it is supported by the BBSRC Strategic Training Awards for Research Skills (STARS) grant (BB/P022766/1). The training room is located on the first floor and there is currently no wheelchair or level access available to this level. Please note that if you are not eligible for a University of Cambridge [Raven](http://www.ucs.cam.ac.uk/docs/faq/raven/n5) account you will need to book or register your interest by linking [here](http://bioinfotraining.bio.cam.ac.uk/booking-form/?event-id=3246150&course-title=Statistics%20bootcamp%20using%20R).'' 2020-02-25 09:30:00 UTC 2020-02-28 17:30:00 UTC University of Cambridge Craik-Marshall Building, Cambridge, United Kingdom Craik-Marshall Building Cambridge United Kingdom CB2 3AR Bioinformatics University of Cambridge Bioinformatics Training [] Graduate studentsPostdocs and Staff members from the University of CambridgeInstitutions and other external Institutions or individuals workshops_and_courses [] HDRUK
  • Systems Workshop: Programming MareNostrum 4 @ BSC

    26 - 27 February 2020

    Systems Workshop: Programming MareNostrum 4 @ BSC https://tess.oerc.ox.ac.uk/events/systems-workshop-programming-marenostrum-4-bsc-79e95f4b-055f-4b64-a716-5250d4731892 The registration to this course is now open. Please, bring your own laptop.  All the PATC courses at BSC are free of charge. Course convener: David Vicente Lecturers: David Vicente, Javier Bartolomé, Jorge Rodríguez, Carlos Tripiana, Oscar Hernandez, Félix Ramos, Cristian Morales, Francisco González, Ricard Zarco, Helena Gómez, Pablo Ródenas, Gaurav Saxena y Maicon Faria. Objectives: The objective of this course is to present to potential users the new configuration of MareNostrum and a introduction on how to use the new system (batch system, compilers, hardware, MPI, etc).Also It will provide an introduction about RES and PRACE infrastructures and how to get access to the supercomputing resources available. Learning Outcomes: The students who finish this course will know the internal architecture of the new MareNostrum, how it works, the ways to get access to this infrastructure and also some information about optimization techniques for its architecture. Level: INTERMEDIATE -for trainees with some theoretical and practical knowledge; those who finished the beginners course. Prerequisites:  Any potential user of a HPC infrastructure will be welcome Agenda: DAY 1 (Feb. 26) 09:00 - 17:00                                  Session 1 / 09:00 – 13:00 (2:45 h lectures, 0:45h practical)                                        9:00. - 9:30 Introduction to BSC, PRACE PATC and this training (David Vicente) 9:30 - 10:30 MareNostrum 4 – the view from System administration group (Javier Bartolomé) 10:30 - 11:00 COFFEE BREAK       11:00 - 11:45 How to use MN4 – Basics: Batch system, file systems, compilers, modules, DT, BSC commands     (Félix Ramos, Francisco González, Ricard Zarco, Helena Gómez) 11:45 - 12:30 Hands-on I (Félix Ramos, Francisco González, Ricard Zarco, Helena Gómez) 12:30 - 13:00 Deep Learning and Big data tools on MN4  (Carlos Tripiana) 13:00 - 14:15 LUNCH (not hosted)           Session 2 / 14:15 – 17:00 (2:15h)                                          14:15 - 15:15 How to use MN4 – Parallel programming: OpenMP, Hands-on II (Jorge Rodríguez, Maicon Saul Faria) 15:15 - 16:00 How to use MN4 – Parallel programming: MPI (Pablo Ródenas, Gaurav Saxena) 16:00 - 16:30 COFFEE BREAK       16:30 - 17:00 How to use MN4 – Parallel programming: MPI Hands-on III (Pablo Ródenas, Gaurav Saxena)                                            DAY 2 (Feb. 27) 09:00 - 13:00                                  Session 3 / 09:00 – 13:00 (2:00h lectures, 1:30 h practical)                                        9:00 - 9:30 How can I get resources from you? - RES (David Vicente) 9:30 - 10:00 How can I get Resources from you? – PRACE (Cristian Morales) 10:00 - 10:30 HPC Architectures (David Vicente) 10:30 - 11:00 COFFEE BREAK       11:00 - 12:00 Containers on HPC (Óscar Hernández) 12:00 - 13:00 Debugging on MareNostrum, from GDB to DDT (Óscar Hernández, Cristian Morales) END of COURSE https://events.prace-ri.eu/event/943/ 2020-02-26 08:00:00 UTC 2020-02-27 12:00:00 UTC [] [] [] workshops_and_courses [] []
  • Data Carpentry - Mansfield Library, University of Montana

    26 February 2020

    United States of America

    Data Carpentry - Mansfield Library, University of Montana https://tess.oerc.ox.ac.uk/events/data-carpentry-mansfield-library-university-of-montana Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-02-26 09:00:00 UTC 2020-02-26 00:00:00 UTC Mansfield Library, University of Montana, United States of America Mansfield Library, University of Montana United States of America University of Montana [] [] workshops_and_courses [] []
  • First steps with Git for reproducible research

    27 February 2020

    Lausanne, Switzerland

    Elixir node event
    First steps with Git for reproducible research https://tess.oerc.ox.ac.uk/events/first-steps-with-git-for-reproducible-research-date-to-be-confirmed Overview The course is now full. Thank you for your understanding. Git is an open source, distributed, version control system for tracking changes in source code and other types of text documents. 2020-02-27 09:00:00 UTC 2020-02-27 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Galaxy @ ABRF 2020

    29 February - 4 March 2020

    Galaxy @ ABRF 2020 https://tess.oerc.ox.ac.uk/events/galaxy-abrf-2020 2020-02-29 09:00:00 UTC 2020-03-04 00:00:00 UTC [] Pratik Jagtap [] [] [] [] []
  • Performance Analysis and Tools @ BSC

    2 - 3 March 2020

    Performance Analysis and Tools @ BSC https://tess.oerc.ox.ac.uk/events/performance-analysis-and-tools-bsc-0184c0d3-9502-459b-9b25-7aab3b1ce61b The registration to this course is now open. Please, bring your own laptop.  All the PATC courses at BSC are free of charge. Course convener: Judit Gimenez, Tools Group Manager, Computer Sciences - Performance Tools, BSC Objectives: The objective of this course is to learn how Paraver and Dimemas tools can be used to analyze the performance of parallel applications and to familiarize with the tools usage as well as instrumenting applications with Extrae. Learning Outcomes:The students who finish this course will have a basic knowledge on the usage of the BSC performance tools. They will be able to apply the same methodology to their applications, identifying potential bottlenecks and getting hints on how to improve the applications performance. Level:  INTERMEDIATE - for trainees with some theoretical and practical knowledge. (All courses are designed for specialists with at least finished 1st cycle degree) Prerequisites: Good knowledge of C/C++ Basic knowledge of CUDA/OpenCL Basic knowledge of MPI, OpenMP https://events.prace-ri.eu/event/950/ 2020-03-02 08:30:00 UTC 2020-03-03 16:30:00 UTC [] [] [] workshops_and_courses [] []
  • Introduction to Multiomics Data Integration

    2 - 5 March 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Multiomics Data Integration https://tess.oerc.ox.ac.uk/events/introduction-to-multiomics-data-integration-6962ae20-eca6-4163-bd63-79a845550ae1 We are currently developing the course programme for 2020, and as further information about the course becomes available we will update this page. 2020-03-02 09:00:00 UTC 2020-03-05 17:00:00 UTC European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) Cambridge United Kingdom CB10 1SD [] EMBL-EBI Training Team [] [] [] [] []
  • 2020 Galaxy Admin Training

    2 - 7 March 2020

    2020 Galaxy Admin Training https://tess.oerc.ox.ac.uk/events/2020-galaxy-admin-training 2020-03-02 09:00:00 UTC 2020-03-07 00:00:00 UTC [] Instructors [] [] [] [] []
  • Introduction to Multiomics Data Integration and Visualisation

    2 - 6 March 2020

    Cambridge, United Kingdom

    Elixir node event
    Introduction to Multiomics Data Integration and Visualisation https://tess.oerc.ox.ac.uk/events/introduction-to-multiomics-data-integration-and-visualisation This introductory course will highlight the challenges that researchers face in integrating multiomics data sets using biological examples. 2020-03-02 09:00:00 UTC 2020-03-06 13:30:00 UTC European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Cambridge, United Kingdom European Bioinformatics Institute (EMBL-EBI) - Training Room 1 Cambridge United Kingdom CB10 1SD [] Meredith Willmott [] [] [] [] HDRUK
  • Traitement de données de séquences par Galaxy

    2 - 3 March 2020

    Traitement de données de séquences par Galaxy https://tess.oerc.ox.ac.uk/events/traitement-de-donnees-de-sequences-par-galaxy-675d1abd-7a84-4e0f-86a2-c15baaa02a4d 2020-03-02 09:00:00 UTC 2020-03-03 00:00:00 UTC [] Yvan Le Bras [] [] [] [] []
  • DIPLÔME UNIVERSITAIRE EN BIOINFORMATIQUE INTÉGRATIVE : DU-BII 2020

    2 March - 19 June 2020

    Elixir node event
    DIPLÔME UNIVERSITAIRE EN BIOINFORMATIQUE INTÉGRATIVE : DU-BII 2020 https://tess.oerc.ox.ac.uk/events/diplome-universitaire-en-bioinformatique-integrative-du-bii-2020 No description available 2020-03-02 09:00:00 UTC 2020-06-19 00:00:00 UTC [] [] [] [] [] []
  • Data Carpentry - Earlham Institute

    3 - 4 March 2020

    United Kingdom

    Data Carpentry - Earlham Institute https://tess.oerc.ox.ac.uk/events/data-carpentry-earlham-institute Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-03-03 09:00:00 UTC 2020-03-04 00:00:00 UTC Earlham Institute, United Kingdom Earlham Institute United Kingdom Earlham Institute [] [] workshops_and_courses [] []
  • Bulk RNASeq in Galaxy: from reads to counts

    3 - 4 March 2020

    Bulk RNASeq in Galaxy: from reads to counts https://tess.oerc.ox.ac.uk/events/bulk-rnaseq-in-galaxy-from-reads-to-counts-1b64641e-53ed-420a-a907-2fcc71acb1ac 2020-03-03 09:00:00 UTC 2020-03-04 00:00:00 UTC [] Lieven Sterck, Tuur Muyldermans [] [] [] [] []
  • Protein sequence databases and sequence annotation

    3 March 2020

    Lausanne, Switzerland

    Elixir node event
    Protein sequence databases and sequence annotation https://tess.oerc.ox.ac.uk/events/protein-sequence-databases-and-sequence-annotation Overview Using high-throughput technologies, you can identify long lists of candidate genes that differ between two experimental conditions. 2020-03-03 09:00:00 UTC 2020-03-03 00:00:00 UTC SIB, Lausanne, Switzerland SIB Lausanne Switzerland [] training@sib.swiss [] Graduate studentsIndustryAcademicsPhDPhD students workshops_and_courses [] []
  • Data Manipulation and Visualisation

    3 March 2020

    United Kingdom

    Data Manipulation and Visualisation https://tess.oerc.ox.ac.uk/events/data-manipulation-and-visualisation-d825c07e-60a9-49ab-ab4b-75c5a33efb3e R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. 2020-03-03 09:30:00 UTC 2020-03-03 17:00:00 UTC Pam Liversidge Building, Design Studio 1, D06, United Kingdom Pam Liversidge Building, Design Studio 1, D06 United Kingdom S10 2HQ [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []
  • Heterogeneous Programming on GPUs with MPI + OmpSs @ BSC

    4 - 5 March 2020

    Heterogeneous Programming on GPUs with MPI + OmpSs @ BSC https://tess.oerc.ox.ac.uk/events/heterogeneous-programming-on-gpus-with-mpi-ompss-bsc-41b0ab3c-13c9-4b4e-926c-8256af6b7e0c The registration to this course is now open. Please, bring your own laptop. All the PATC courses at BSC are free of charge. Objectives:  The tutorial will motivate the audience on the need for portable, efficient programming models that put less pressure on program developers while still getting good performance for clusters and clusters with GPUs. More specifically, the tutorial will: Introduce the hybrid MPI/OmpSs parallel programming model for future exascale systems Demonstrate how to use MPI/OmpSs to incrementally parallelize/optimize: MPI applications on clusters of SMPs, and Leverage CUDA kernels with OmpSs on clusters of GPUs Level: INTERMEDIATE: for trainees with some theoretical and practical knowledge; those who finished the beginners course ADVANCED: for trainees able to work independently and requiring guidance for solving complex problems Requirements:  Good knowledge of C/C++ Basic knowledge of CUDA/OpenCL Basic knowledge of Paraver/Extrae Learning Outcomes: The students who finish this course will be able to develop benchmarks and simple applications with the MPI/OmpSs programming model to be executed in clusters of GPUs. https://events.prace-ri.eu/event/951/ 2020-03-04 08:30:00 UTC 2020-03-05 16:30:00 UTC [] [] [] workshops_and_courses [] []
  • Microbial single cell genomics workshop – from environment to infection

    4 - 6 March 2020

    Elixir node event
    Microbial single cell genomics workshop – from environment to infection https://tess.oerc.ox.ac.uk/events/microbial-single-cell-genomics-workshop-from-environment-to-infection 2020-03-04 09:00:00 UTC 2020-03-06 00:00:00 UTC [] [] [] workshops_and_courses [] []
  • Mol*: Improved molecular visualisation at PDBe

    4 March 2020

    Elixir node event
    Mol*: Improved molecular visualisation at PDBe https://tess.oerc.ox.ac.uk/events/mol-improved-molecular-visualisation-at-pdbe This webinar will focus on the use of the new online molecular visualisation tool, Mol* from PDBe. We will show basic usage, observation of electron density maps and EM volumes, interrogation of ligand structures, and the visualisation of sequence annotations. 2020-03-04 15:30:00 UTC 2020-03-04 16:30:00 UTC [] Melissa Burke [] [] [] [] HDRUK
  • RNA-seq data analysis with Chipster

    5 March 2020

    Elixir node event
    RNA-seq data analysis with Chipster https://tess.oerc.ox.ac.uk/events/rna-seq-data-analysis-with-chipster-b8b21774-97e8-4b77-885a-9f8c3c5bf9a2 This hands-on course introduces the participants to RNA-seq data analysis methods, tools and file formats. It covers the whole workflow from quality control and alignment to quantification and differential expression analysis. The free and user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required. 2020-03-05 09:00:00 UTC 2020-03-05 17:00:00 UTC CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. [] [] [] workshops_and_courses [] []
  • Data Carpentry - The Port Watson Mini-Conference Center

    5 - 6 March 2020

    United States of America

    Data Carpentry - The Port Watson Mini-Conference Center https://tess.oerc.ox.ac.uk/events/data-carpentry-the-port-watson-mini-conference-center Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-03-05 09:00:00 UTC 2020-03-06 00:00:00 UTC The Port Watson Mini-Conference Center, United States of America The Port Watson Mini-Conference Center United States of America SUNY Cortland [] [] workshops_and_courses [] []
  • Data Carpentry - George Washington University

    5 - 6 March 2020

    United States of America

    Data Carpentry - George Washington University https://tess.oerc.ox.ac.uk/events/data-carpentry-george-washington-university Data Carpentry trains researchers in the core data skills for efficient, shareable, and reproducible research practices. We run accessible, inclusive training workshops; teach openly available, high-quality, domain-tailored lessons; and foster an active, inclusive, diverse instructor community that promotes and models reproducible research as a community norm. 2020-03-05 09:00:00 UTC 2020-03-06 00:00:00 UTC George Washington University, United States of America George Washington University United States of America George Washington University [] [] workshops_and_courses [] []
  • Open Targets Platform workshop - EMBL-EBI

    5 March 2020

    United Kingdom

    Open Targets Platform workshop - EMBL-EBI https://tess.oerc.ox.ac.uk/events/open-targets-platform-workshop-embl-ebi In this EMBL-EBI Introduction to Multiomics Data Integration and Visualisation course, we introduce Open Targets and its bioinformatics tools, namely Open Targets Platform and Open Targets Genetics, comprehensive and robust data integration resources for systematic target identification and prioritisation in drug discovery. 2020-03-05 09:00:00 UTC 2020-03-05 00:00:00 UTC Hinxton, United Kingdom Hinxton United Kingdom [] [] [] workshops_and_courses [] Open Targets
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